Research Papers

2016-

  • Maruyama H, Fujiwara K, Kumeta M, Koyama D. (2021) "Ultrasonic control of neurite outgrowth direction" Scientific Reports, 11, 20099.
  • Maarof ND, Kumeta M, Yoshimura SH. (2021) "Modulation of actin-binding and -bundling activities of MISP/Caprice by multiple phosphorylation" Biochem Biophys Res Commun., 561:128-135
  • Zhang W, Watanabe R, Konishi HA, Fujiwara T, Yoshimura SH, Kumeta M. (2020) "Redox-sensitive cysteines confer proximal control of the molecular crowding barrier in the nuclear pore" Cell Reports, 33(11):108484
  • Duic I, Tadakuma H, Harada Y, Yamaue R, Deguchi K, Suzuki Y, Yoshimura SH, Kato H, Takeyasu K, Fujita T. (2020) "Viral RNA recognition by LGP2 and MDA5, and activation of signaling through step-by-step conformational changes" Nucleic Acids Res., 48(20):11664-11674
  • Yamaguchi I, Yoshimura SH, Katoh H. (2020) "High cell density increases glioblastoma cell viability under glucose deprivation via degradation of the cystine/glutamate transporter xCT (SLC7A11)" J. Biol. Chem., 295(20):6936-6945
  • Konishi HA, Yoshimura SH. (2019) "Interactions between non‐structured domains of FG‐ and non‐FG‐nucleoporins coordinate the ordered assembly of the nuclear pore complex in mitosis" FASEB Journal, 34(1):1532-1545
  • Fumoto K, Takigawa-Imamura H, Sumiyama K, Yoshimura SH, Maehara N, Kikuchi A. (2019) "Mark1 regulates distal airspace expansion through type I pneumocyte flattening in lung development" J. Cell Sci.132(24):jcs235556
  • Yamazaki H, Kosako H, Yoshimura SH. (2019) "Quantitative proteomics indicate a strong correlation of mitotic phospho-/dephosphorylation with non-structured regions of substrates" Biochim Biophys Acta Proteins Proteom., 1868(1):140295
  • Nishimura K, Johmura Y, Deguchi K, Jiang Z, Uchida K, Suzuki N, Shimada M, Chiba Y, Hirota T, Yoshimura SH, Kono K, Nakanishi M. (2019) "Cdk1-mediated DIAPH1 phosphorylation maintains metaphase cortical tension and inactivates the spindle assembly checkpoint at anaphase" Nature Commun., 10(1)981
  • Yoshida A, Sakai N, Uekusa Y, Imaoka Y, Itagaki Y, Suzuki Y, Yoshimura SH. (2018) "Morphological changes of plasma membrane and protein assembly during clathrin-mdeiated endobytosis" PLOS Biology, 16(5): e2004786.
  • Kumeta M, Panina Y, Yamazaki H, Takeyasu K, Yoshimura SH. (2018) "N‐terminal dual lipidation‐coupled molecular targeting into the primary cilium" Genes to Cells,. in press
  • Kumeta M, Takahashi D, Takeyasu K, Yoshimura SH. (2018) "Cell type-specific suppression of mechanosensitive genes by audible sound stimulation"  PLOS ONE, 13(1): e0188764.
  • Kumeta M, Konishi HA, Zhang W, Sakagami S, Yoshimura SH. (2017) "Prolines in the α-helix confer the structural flexibility and functional integrity of importin β" J. Cell Sci.131(1):jcs.206326
  • Konishi HA, Asai S, Watanabe TM, and Yoshimura SH. (2017) "In vivo analysis of protein crowding within the nuclear pore complex in interphase and mitosis" Sci. Rep., 7 (5709) [Top 100 Scientific Reports cell biology papers in 2017]
  • Zhang Y, Yoshida A, Sakai N, Uekusa Y, Kumeta M, Yoshimura SH. (2017) “In vivo dynamics of the cortical actin network revealed by fast-scanning atomic force microscopy” Microscopy, 20:1-11. [selected as Editor's Choice] [The Japanese Society of Microscopy Award for the Scientific Paper 2019]
  • Yoshimura SH, Hirano T. (2016) "HEAT repeats – versatile arrays of amphiphilic helices working in crowded environments?" J. Cell Sci., 129(21):3963-3970.
  • Shrivastava G, Hyodo M, Yoshimura SH, Akita H, Harashima H. (2016) "Identification of a Nucleoporin358-Specific RNA Aptamer for Use as a Nucleus-Targeting Liposomal Delivery System" Nucleic Acid Therapeutics, 26(5):286-298.
  • Lolodi O, Yamazaki H, Otsuka S, Kumeta M, Yoshimura SH. (2016) "Dissecting in vivo steady-state dynamics of karyopherin-dependent nuclear transport" MBoC, 27(1):167-76.

2011-2015

  • Uemura T, Washino G, Kitagawa S, Takahashi H, Yoshida A, Takeyasu K, Takayanagi M, Nagaoka M. (2015) Molecule-level studies on dynamic behavior of oligomeric chain molecules in porous coordination polymers. J. Phys. Chem., 119(37):21504–21514.
  • Taneo J, Adachi T, Yoshida A, Takeyasu K, Takahara K, Inaba K. (2015) Amyloid β oligomers induce interleukin-1β production in primary microglia in a cathepsin B- and reactive oxygen species-dependent manner. Biochem. Biophys. Res. Commun., S0006-291X(15):00213-2.
  • Yoshida A, Sakai N, Uekusa Y, Deguchi K, Gilmore JL, Kumeta M, Ito S, Takeyasu K. (2015) Probing in vivo dynamics of mitochondria and cortical actin networks using high-speed atomic force/fluorescence microscopy. Genes Cells, 20(2):85-94.
  • Yoshimura SH, Kumeta M, Takeyasu K. (2014) Structural mechanism of nuclear transport mediated by importin β and flexible amphiphilic proteins. Structure, 22(12):1699-710.
  • Sotoma S, Yoshinari Y, Igarashi R, Yamazaki A, Yoshimura SH, Tochio H, Shirakawa M, Harada Y. (2014) Effective production of fluorescent nanodiamonds containing negatively-charged nitrogen-vacancy centers by ion irradiation. Diam. Relat. Mater., 49:33-38.
  • Yu H, Zhou J, Takahashi H, Yao W, Suzuki Y, Yuan X, Yoshimura SH, Zhang Y, Liu Y, Emmett N, Bond V, Wang D, Ding X, Takeyasu K, Yao X. (2014) Spatial control of proton pump H,K-ATPase docking at the apical membrane by phosphorylation-coupled ezrin-syntaxin 3 interaction. J. Biol. Chem., 289(48):33333-42.
  • Suzuki Y, Endo M, Canas C, Ayora S, Alonso JC, Sugiyama H, Takeyasu K. (2014) Direct analysis of Holliday junction resolving enzyme in a DNA origami nanostructure. Nucleic Acids Res., 42(11):7421-28.
  • Canas C, Suzuki Y, Marchisone C, Carrasco B, Freire-Beneitez V, Takeyasu K, Alonso JC, Ayora S. (2014) Interaction of branch migration translocases with the Holliday junction resolving enzyme and their implications in Holliday junction resolution. J Biol Chem., 289(25):17634-46.
  • Wada K, Sato M, Araki N, Kumeta M, Hirai Y, Takeyasu K, Furukawa K, Horigome T. (2014) Dynamics of WD-repeat containing proteins in SSU processome components. Biochem. Cell Biol., 92(3):191-199.
  • Gilmore JL, Aizaki H, Yoshida A, Deguchi K, Kumeta M, Junghof J, Wakita T, Takeyasu K. (2014) Nanoimaging of ssRNA: Genome architecture of the Hepatitis C virus revealed by atomic force microscopy. J. Nanomed. Nanotechol., S5:010.
  • Funabiki M, Kato H, Miyachi Y, Toki H, Motegi H, Inoue M, Minowa O, Yoshida A, Deguchi K, Sato H, Ito S, Shiroishi T, Takeyasu K, Noda T, Fujita T. (2014) Autoimmune disorders associated with gain of function of the intracellular sensor MDA5. Immunity40(2):199-212.
  • Kumeta M, Gilmore JL, Umeshima H, Ishikawa M, Kitajiri SI, Horigome T, Kengaku M, Takeyasu K. (2014) Caprice/MISP is a novel F-actin bundling protein critical for actin-based cytoskeletal reorganizations. Genes Cells, 19(4):338-49.
  • Louvet E, Yoshida A, Kumeta M, Takeyasu K. (2013) Probing the stiffness of isolated nucleoli by atomic force microscopy. Histochem. Cell Biol., 141(4):365-81
  • Gilmore JL, Kumeta M, Takeyasu K. (2013) AFM investigation of the organization of actin bundles formed by actin-binding proteins. Journal of Surface Engineered Materials and Advanced Technology (JSEMAT), 3(4A):13-19.
  • Sato M, Araki N, Kumeta M, Takeyasu K, Taguchi Y, Asai T, Furukawa K, Horigome T. (2013) Interaction, mobility and phosphorylation of human orthologues of WD repeat-containing components of the yeast SSU processome t-UTP sub-complex. Biochem. Cell Biol., 91(6):466-75.
  • Kumeta M, Hirai Y, Yoshimura SH, Horigome T, Takeyasu K. (2013) Antibody-based analysis reveals "filamentous vs. non-filamentous" and "cytoplasmic vs. nuclear" crosstalk of cytoskeletal proteins. Exp. Cell Res., 319(20):3226-37.
  • Hirai Y, Louvet E, Oda T, Kumeta M, Watanabe Y, Horigome T, Takeyasu K. (2013) Nucleolar scaffold protein, WDR46, determines the granular compartmental localization of nucleolin and DDX21. Genes Cells, 18(9):780-97.
  • Maruyama H, Harwood JC, Moore KM, Paszkiewicz K, Durley SC, Fukushima H, Atomi H, Takeyasu K, Kent NA. (2013) An alternative beads-on-a-string chromatin architecture in Thermococcus kodakarensis. EMBO Rep., 14(8):711-7.
  • Suzuki Y, Sakai N, Yoshida A, Uekusa Y, Yagi A, Imaoka Y, Ito S, Karaki K, Takeyasu K. (2013) High-speed atomic force microscopy combined with inverted optical microscopy for studying cellular events. Sci. Rep., 3:2131.
  • Yadav T, Carrasco B, Hejna J, Suzuki Y, Takeyasu K, Alonso JC. (2013) Bacillus subtilis DprA recruits RecA onto ssDNA and mediates annealing of complementary ssDNA strands coated by SsbB and SsbA. J. Biol. Chem., 288:22437-22450.
  • Yoshimura SH, Otsuka S, Kumeta M, Taga M, Takeyasu K. (2013) Intermolecular disulfide bonds among nucleoporins regulate karyopherin-dependent nuclear transport. J. Cell Sci., 126(Pt 14):3141-50.
  • Kotani T, Akabane S, Takeyasu K, Ueda T, Takeuchi N. (2013) Human G-proteins, ObgH1 and Mtg1, associate with the large mitochondrial ribosome subunit and are involved in translation and assembly of respiratory complexes. Nucleic Acids Res., 41(6):3713-22.
  • Suzuki Y, Goetze TA, Stroebel D, Balasuriya D, Yoshimura SH, Henderson RM, Paoletti P, Takeyasu K, Edwardson JM. (2013) Visualization of structural changes accompanying activation of N-methyl-D-aspartate (NMDA) receptors using fast-scan atomic force microscopy imaging. J. Biol. Chem., 288(2):778-84.
  • Prieto E, Hizume K, Kobori T, Yoshimura SH, Takeyasu K. (2012) Core histone charge and linker histone H1 effects on the chromatin structure of Schizosaccharomyces pombe. Biosci. Biotechnol. Biochem., 76(12):2261-6.
  • Zecchi L, Lo Piano A, Suzuki Y, Cañas C, Takeyasu K, Ayora S. (2012) Characterization of the Holliday junction resolving enzyme encoded by the Bacillus subtilis bacteriophage SPP1. PLoS One, 7(10):e48440.
  • Hirano Y, Hizume K, Kimura H, Takeyasu K, Haraguchi T, Hiraoka Y. (2012) Lamin B receptor recognizes specific modifications of histone H4 in heterochromatin formation. J. Biol. Chem., 287(51):42654-63.
  • Kumeta M, Yamaguchi H, Yoshimura SH, Takeyasu K. (2012) Karyopherin-independent spontaneous transport of amphiphilic proteins through the nuclear pore. J. Cell Sci., 125(Pt 21):4979-84.
  • Shin M, Lagda AC, Lee JW, Bhat A, Rhee JH, Kim JS, Takeyasu K, Choy HE. (2012) Gene silencing by H-NS from distal DNA site. Mol. Microbiol., 86(3):707-19.
  • Suzuki Y, Shin M, Yoshida A, Yoshimura SH, Takeyasu K. (2012) Fast microscopical dissection of action scenes played by Escherichia coli RNA polymerase. FEBS Lett., 586(19):3187-92.
  • Yoshimura SH, Khan S, Ohno S, Yokogawa T, Nishikawa K, Hosoya T, Maruyama H, Nakayama Y, Takeyasu K. (2012) Site-specific attachment of a protein to a carbon nanotube end without loss of protein function. Bioconjug. Chem., 23(7):1488-93.
  • Kumeta M, Yoshimura SH, Hejna J, Takeyasu K. (2012) Nucleocytoplasmic shuttling of cytoskeletal proteins: molecular mechanism and biological significance. Int. J. Cell Biol., 2012:494902.
  • Akai Y, Kurokawa Y, Nakazawa N, Tonami-Murakami Y, Suzuki Y, Yoshimura SH, Iwasaki H, Shiroiwa Y, Nakamura T, Shibata E, Yanagida M. (2011) Opposing role of condensin hinge against replication protein A in mitosis and interphase through promoting DNA annealing. Open Biol., 1(4):110023.
  • Suzuki Y, Gilmore JL, Yoshimura SH, Henderson RM, Lyubchenko YL, Takeyasu K. (2011) Visual analysis of concerted cleavage by type IIF restriction enzyme SfiI in subsecond time region. Biophys J., 21;101(12):2992-8.
  • Yoshikawa Y, Suzuki Y, Yamada K, Fukuda W, Yoshikawa K, Takeyasu K, Imanaka T. (2011) Critical behavior of megabase-size DNA toward the transition into a compact state. J. Chem. Phys., 14;135(22):225101.
  • Sanchez H, Suzuki Y, Yokokawa M, Takeyasu K, Wyman C. (2011) Protein-DNA interactions in high speed AFM: single molecule diffusion analysis of human RAD54. Integr Biol., 3(11):1127-34.
  • Yokokawa M, Takeyasu K. (2011) Motion of the Ca2+-pump captured. FEBS J., 278(17):3025-31.
  • Yoshimura SH, Khan S, Maruyama H, Nakayama Y, Takeyasu K. (2011) Fluorescence labeling of carbon nanotubes and visualization of a nanotube-protein hybrid under fluorescence microscope. Biomacromolecules, 12(4):1200-4.
  • Duzdevich D, Li J, Whang J, Takahashi H, Takeyasu K, Dryden DT, Morton AJ, Edwardson JM. (2011) Unusual structures are present in DNA fragments containing super-long Huntingtin CAG repeats. PLoS One, 6(2):e17119.
  • Ohno H, Kobayashi T, Kabata R, Endo K, Iwasa T, Yoshimura SH, Takeyasu K, Inoue T, Saito H. (2011) Synthetic RNA-protein complex shaped like an equilateral triangle. Nat Nanotechnol., 6(2):116-20.
  • Asally M, Yasuda Y, Oka M, Otsuka S, Yoshimura SH, Takeyasu K, Yoneda Y. (2011) Nup358, a nucleoporin, functions as a key determinant of the nuclear pore complex structure remodeling during skeletal myogenesis. FEBS J., 278(4):610-21.
  • Maruyama H, Shin M, Oda T, Matsumi R, Ohniwa RL, Itoh T, Shirahige K, Imanaka T, Atomi H, Yoshimura SH, Takeyasu K. (2011) Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis. Mol. Biol. Cell, 22(3):386-98.
  • Oda T, Ohniwa RL, Suzuki Y, Denawa M, Kumeta M, Okamura H, Takeyasu K. (2011) Evolutionary dynamics of spliceosomal intron revealed by in silico analyses of the P-Type ATPase superfamily genes. Mol Biol Rep., 38(4):2285-93.

2006-2010

  • Takahashi H, Shahin V, Henderson RM, Takeyasu K, Edwardson JM. (2010) Interaction of synaptotagmin with lipid bilayers, analyzed by single-molecule force spectroscopy. Biophys J., 99(8):2550-8.
  • Ohniwa RL, Hibino A, Takeyasu K. (2010) Trends in research foci in life science fields over the last 30 years monitered by emerging topics. Scientometric, 85:111-127.
  • Yokokawa M, Takeyasu K, Edwardson JM. (2010) Acid-sensing ion channel (ASIC) 1a undergoes a height transition in response to acidification. FEBS Lett., 584(14): 3107-10.
  • Manfredi C, Suzuki Y, Yadav T, Takeyasu K, Alonso JC. (2010) RecO-mediated DNA homology search and annealing is facilitated by SsbA. Nucleic Acids Res., 38(20):6920-9.
  • Teramoto J, Yoshimura SH, Takeyasu K, Ishihama A. (2010) A novel nucleoid protein of Escherichia coli induced under anaerobiotic growth conditions. Nucleic Acids Res., 38(11):3605-18.
  • Baumann O, Salvaterra PM, Takeyasu K. (2010) Developmental changes in beta-subunit composition of Na,K-ATPase in the Drosophila eye. Cell Tissue Res., 340(2):215-28.
  • Suzuki Y, Higuchi Y, Hizume K, Yokokawa M, Yoshimura SH, Yoshikawa K, Takeyasu K. (2010) Molecular Dynamics of DNA and Nucleosomes in Solution Studied by Fast-scanning Atomic Force Microscopy. Ultramicroscopy, 110(6): 682-8.
  • Kumeta M, Yoshimura SH, Harata M, Takeyasu K. (2010) Molecular mechanisms underlying nucleocytoplasmic shuttling of actinin-4. J. Cell Sci., 123 123(Pt 7): 1020-30.
  • Gilmore JL, Suzuki Y, Tamulaitis G, Siksnys V, Takeyasu K, Lyubchenko YL. (2009) Single-Molecule Dynamics of the DNA-EcoRII Protein Complexes Revealed with High-Speed Atomic Force Microscopy. Biochemistry, 48(44): 10492-8.
  • Pratto F, Suzuki Y, Takeyasu K, Alonso JC. (2009) Single-molecule analysis of protein-DNA complexes formed during partition of newly replicated plasmid molecules in Streptococcus pyogenes. J. Biol Chem., 284(44): 30298-306.
  • Araki S, Hizume K, Iwaki T, Suzuki Y, Takeyasu K, Yoshikawa K. (2009) Nucleosomal arrays reconstituted from ring and linear DNA. Chem. Phys. Lett., 479: 284–289.
  • Hizume K, Nakai T, Araki S, Prieto E, Yoshikawa K, Takeyasu K. (2009) Removal of histone tails from nucleosome dissects the physical mechanisms of salt-induced aggregation, linker histone H1-induced compaction and 30-nm fiber formation of the nucleosome array. Ultramicroscopy, 109: 868-873.
  • Hirano Y, Iwase Y, Ishii K, Kumeta M, Horigome T, Takeyasu K. (2009) Cell Cycle-Dependent Phosphorylation of MAN-1. Biochemistry, 48:1636-1643.
  • Hirano Y, Ishii K, Kumeta K, Furukawa K, Takeyasu K, Horigome T. (2009) Proteomic and targeted analytical identification of BXDC1 and EBNA1BP2 as dynamic scaffold proteins in the nucleolus. Genes Cells, 14: 155-166.
  • Batta K, Yokokawa M, Takeyasu K, Kundu TK. (2008) Human Transcriptional coactivator PC4 stimulates DNA end joining and activates DSB repair activity. J. Mol. Biol., 23; 385(3):788-99.
  • Otsuka S, Iwasaka S, Yoneda Y, Takahashi H, Takeyasu K, Yoshimura SH. (2008) Individual binding pockets of importin beta for FG-nucleoporins have different binding properties and different sensitivities to RanGTP. Proc Natl Acad Sci USA, 105: 16101-16106.
  • Ishii K, Hirano Y, Araki N, Oda T, Kumeta M, Takeyasu K, Furukawa K, Horigome T. (2008) Nuclear matrix contains novel WD-repeat and disordered-region-rich proteins. FEBS Lett., 582: 3515-3519.
  • Yokokawa M, Takeyasu K, Yoshimura SH. (2008) Mechanical properties of plasma membrane and nuclear envelope measured by scanning probe microscope. J. Microscopy, 232: 82-90.
  • Yoshimura SH, Iwasaka S, Schwarz W, Takeyasu K. (2008) Fast degradation of the auxiliary subunits of Na/K-ATPase in the plasma membrane of HeLa cells. J. Cell Sci., 121: 2159-2168.
  • Wen J, Lancaster L, Hodges C, Zeri A, Yoshimura SH, Noller HF, Bustamante C, Tinoco I. (2008) Following translation by single ribosomes one codon at a time. Nature, 452598-603.
  • Hirano Y, Takahashi H, Kumeta M, Hizume K, Hirai Y, Otsuka S, Yoshimura SH, Takeyasu K. (2008) Nuclear Architectures and Chromatin Dynamics Revealed by Atomic Force Microscopy in Combination with Biochemistry and Cell Biology. Eur. J. Physiol., 456: 139-153.
  • Shindo E, Kubo K, Ohniwa RL, Takeyasu K, Yoshikawa K. (2008) In situ analysis of the higher-order genome structure in a single Escherichia coli cell. J. Biotechnology, 133: 172-176.
  • Suwastika IN, Uemura T, Shiina T, Sato MH, Takeyasu K. (2008) SYP71,a Plant-specific Qc-SNARE Protein, Reveals Dual Localization to the plasma Membrane and Endoplasmic Reticulum in Arabidopsis. Cell Struc. Func., 33: 185-192.
  • Sanchez H, Cardenas PP, Yoshimura SH, Takeyasu K, Alonso JC. (2008) Dynamic structures of Bacillus subtilis RecN-DNA complexes. Nucleic Acids Res., 36(1):110-20.
  • Ohniwa RL, Morikawa K, Takeshita SL, Kim J, Ohta T, Wada C, Takeyasu K. (2007) Transcription-coupled uncleoid architecture in bacteria. Genes Cells, 12: 1141-1152.
  • Crampton N, Yokokawa M, Dryden DT, Edwardson JM, Rao DN, Takeyasu K, Yoshimura SH, Henderson RM. (2007). Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping. Proc Natl Acad Sci USA, 104: 12755-12760.
  • Liu D, Ge L, Wang F, Takahashi H, Wang D, Guo A, Yoshimura SH, Ward T, Ding X, Takeyasu K, Yao X. (2007) Single-molecule detection of phosphorylation-induced plasticity changes during ezrin activation. FEBS Lett., 581: 3563-3571.
  • Kobori T, Iwamoto S, Takeyasu K, Ohtani T. (2007) Chromatin dynamics of unfolding and refolding controlled by the nucleosome repeat length and the linker and core histones. Biopolymers, 85: 295-307.
  • Morikawa K, Ohniwa RL, Kim J, Takeshita SL, Maruyama A, Inose Y, Takeyasu K, Ohta T. (2007) Biochemical, molecular genetic and structural analyses of the Staphylococcal nucleoid. Microscopy and Microanalysis, 13: 30-35.
  • Ohniwa RL, Morikawa K, Kim J, Kobori T, Hizume K, Matsumi R, Atomi H, Imanaka T, Ohta T, Yoshimura SH, Takeyasu K. (2007) Atomic force microscopy dissects the hierarchy of genome architectures in eukaryote, prokaryote and chloroplast. Microscopy and Microanalysis, 13: 3-12.
  • Muto M, Sargeant A, Tangkawattana P, Takeyasu K, Nishijima Y, Bonagura J, Hoshijima M, Nakade T, Hosaka Y, Faulkner G, Tomono K, Yamaguchi M. (2007) Intranuclear Paracrystals Observed in Striated Muscle Specific LIM Protein-Deficient Mouse Cardimyocytes. Microscopy research and technique, 70: 50-54.
  • Hizume K, Araki S, Yoshikawa K, Takeyasu K. (2007) Topoisomerase II, a scaffold component, promotes chromatin-compaction in vitro in a linker-histone H1-dependent manner. Nucleic Acid Res., 35: 2787-2799.
  • Maruyama H, Yoshimura SH, Akita S, Nagataki A, Nakayama Y. (2007) Covalent attachment of protein to the tip of a multiwalled carbon nanotube without sidewall decoration. J. Appl. Phys., 102:094701.
  • Araki S, Nakai T, Hizume K, Takeyasu K, Yoshikawa K. (2006) Hydrodynamic radius of circular DNA is larger than that of linear DNA. Chem. Physics Lett., 418: 255-259.
  • Ohniwa RL, Morikawa K, Kim J, Ohta T, Ishihama A, Wada C, Takeyasu K. (2006) Dynamic state of DNA topology is essential for genome condensation in baceteria. EMBO J., 25: 5591-5602.
  • Hirano Y, Ohniwa RL, Wada C, Yoshimura SH, Takeyasu K. (2006) Human small G proteins, ObgH1 and ObgH2, participate in the maintenance of mitochondria and nucleolar architectures. Genes Cells, 11: 1295-1304.
  • Das C, Hizume K, Batta K, Kumar BRP, Gadad SS, Ganguly S, Lorain S, Verreault A, Sadhale P, Takeyasu K, Kundu TK. (2006) Transcriptional co-activator PC4, a chromatin-associated protein, induces chromatin condensation. Mol. Cell. Biol., 26: 8303-8315.
  • Yokokawa M, Wada C, Ando T, Sakai N, Yagi A, Takeyasu K. (2006) Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL. EMBO J., 25: 4567-4576.
  • Yokokawa M, Yoshimura SH, Naito Y, Ando T, Yagi A, Sakai N, Takeyasu K. (2006) Fast-scanning atomic force microscopy revealed the molecular mechanism of DNA cleavage by ApaI endonuclease. IEE Proc. Nanobiotechnology, 153: 60-66.
  • Yoshimura SH, Takahashi H, Ohtsuka S, Takeysu K. (2006) Development of glutathione-coupled cantilever for the single-molecule force measurement by scanning force microscopy. FEBS Lett., 580: 3961-3965.
  • Liu D, Zhang N, Du J, Cai X, Zhu M, Jin C, Dou Z, Feng C, Yang Y, Liu K, Takeyasu K, Xie W, Yao X. (2006) Interaction of Skp1 with CENP-E at the midbody is essential for cytokinesis. Biochem. Biophys. Res. Commun., 345: 394-402.
  • Morikawa K, Ohniwa RL, Kim J, Maruyama A, Ohta T, Takeyasu K. (2006) Bacterial nucleoid dynamics: Oxydative stress response in Staphylococcus aureus Genes Cells, 11: 409-423.
  • Yoshikawa Y, Hizume K, Oda Y, Takeyasu K, Araki S, Yoshikawa K. (2006) Protective effect of vitamin C against double-strand breaks in reconstituted chromatin visualized by single-molecule observation. Biophys. J., 90: 993-999.
  • Kobori T, Kodama M, Hizume K, Yoshimura SH, Ohtani T, Takeyasu K. (2006) Comparative structural biology of the genome: Nano-scale imaging of single nucleus from different kingdoms reveals the chromatin built up on a 40 nm structural unit. J. Electron Microscopy, 55: 31-40.

2001-2005

  • Nakai T, Hizume K, Yoshimura SH, Takeyasu K, Yoshikawa K. (2005) Phase transition in reconstituted chromatin. Europhysics Lett., 69(6): 1024-1030.
  • Hirano Y, Segawa M, Ouchi FS, Yamakawa Y, Furukawa K, Takeyasu K, Horigome T. (2005) Dissection of Emerin from barrier-to-autointegration factor is regulated through mitotic phosphorylation of Emerin in a Xenopus egg cell-free system. J. Biol. Chem., 280: 39925-39933.
  • Hizume K, Yoshimura SH, Takeyasu K. (2005) Linker histone H1 per se can induce three-dimensional folding of chromatin fiber. Biochemistry, 44: 12978-12989.
  • Uemura T, Sato MH, Takeyasu K. (2005) The longin domain regulates the vacuolar targeting in Arabidopsis VAMP7 proteins. FEBS Lett., 579: 2842-2846.
  • Sato A, Kobayashi G, Yoshida H, Wada A, Maeda M, Hiraga S, Takeyasu K, Wada C. (2005) The GTP binding protein Obg homologue ObgE is involved in ribosome maturation. Genes Cells, 10: 393-408.
  • Ohniwa RL, Denawa M, Kudo M, Nakamura K, Takeyasu K. (2004) Perspective factor: a novel indicator for the assessment of journal quality. Research Evaluation, 13: 175-180.
  • Mitsuda N, Hisabori T, Takeyasu K, Sato MH. (2004) VOZ; isolation and characterization of novel vascular plant transcription factors with a one-zinc finger from Arabidopsis thaliana. Plant Cell Physiol., 45(7):845-54.
  • Uemura T, Ueda T, Ohniwa RL, Nakano A, Takeyasu K, Sato MH. (2004) Systematic analysis of SNARE Molecules in Arabidopsis: Dissection of the post-Golgi network in pant cells. Cell Structure and Function, 29: 49-65.
  • Kim J, Yoshimura SH, Hizume K, Ishihama A, Takeyasu K. (2004) Fundamental structural unit of the Escherichia coli nucleoid revealed by atomic force microscopy. Nucleic Acid Res., 32: 1982-1992.
  • Yoshimura SH, Maruyama H, Ishikawa F, Ohki R, Takeyasu K. (2004) Molecular mechanisms of DNA end-loop formation by TRF2. Genes Cells, 9: 205-218.
  • Hizume K, Yoshimura SH, Takeyasu K. (2004) Atomic force microscopy demonstrates a critical role of DNA superhelicity in the nucleosome dynamics. Cell Biochem. Biophy., 40: 249-262.
  • Takeyasu K, Kim J, Ohniwa RL, Kobori T, Inose Y, Morikawa K, Ohta T, Ishihama A, Yoshimura SH. (2004) Genome architecture studied by nano-scale imaging: Analyses among bacterial phyla and their implication to eukaryotic genome folding. Cytogenet Genomes Res, 107: 38-48.
  • Zhou X, Yin W, Doi SQ, Robinson SW, Takeyasu K, Fan X. (2003) Stimulation of Na,K-ATPase by low potassium requires reactive oxygen species. Am J Physiol Cell Physiol., 285(2):C319-26.
  • Morikawa K, Inoue Y, Okamura H, Maruyama A, Hayashi H, Takeyasu K, Ohta T. (2003) A new staphylococcal sigma factor in the conserved gene cassette: functional significance and implication for the evolutionary processes. Genes Cells, 8: 699-712.
  • Sakai A, Hizume K, Sutani T, Takeyasu K, Yanagida M. (2003) Condensin but not cohesin heterodimeric SMC induces DNA reannealing through intermediary protein-protein assembly. EMBO J., 22: 2764-2775.
  • Yin W, Jiang G, Takeyasu K, Zhou X. (2003) Stimulation of Na,K-ATPase by low potassium is dependent on transferring. J Membr Biol., 193(3):177-84.
  • Ito K, Toyoda I, Higashiyama M, Uemura D, Sato M, Yoshimura SH, Ishii T, Takeyasu K. (2003) Channel induction by palytoxin in yeast cells expressing Na+,K+-ATPase or its chimera with sarco/endoplasmic reticulum Ca2+-ATPase. (133). FEBS Lett., 543: 108-112.
  • Yoshimura SH, Kim J, Takeyasu K. (2003) On-substrate lysis treatment combined with the scanning probe microscopy revealed chromosome structures in eukaryotes and prokaryotes. J. Electron Microscopy, 52: 415-423.
  • Okamura H, Yasuhari JC, Fambrough DM, Takeyasu K. (2002) P-type ATPases in Caenorhabditis and Drosophila: Implications for Evolution of the P-type ATPase Subunit Families with Special Reference to the Na,K-ATPase and H,K-ATPase Subgroup. J. Membr. Biol., 191: 1-12.
  • Hizume K, Yoshimura SH, Maruyama H, Kim J, Wada H, Takeyasu K. (2002) Chromatin reconstitution: development of a salt-dialysis method monitored by nano-technology. Arch. Histol. Cytol., 65: 405-413.
  • Uemura T, Yoshimura SH, Takeyasu K, Sato MH. (2002) Vacuoler Membrane Dynamics Revealed by GFP-AtVam3 Fusion Protein. Genes Cells, 7: 743-753.
  • Yoshimura SH, Hizume K, Murakami A, Sutani T, Takeyasu K, Yanagida M. (2002) Condensin Architecture and Interaction with DNA: Regulatory Non-SMC Subunits Bind to the Head of SMC Heterodimer. Curr. Bio., 12: 508-512.
  • Sakaue S, Yoshikawa K, Yoshimura SH, Takeyasu K. (2001) Histone Core Slips along DNA and Prefers Positioning at the Chain End. Phys. Rev. Lett., 87: 078105-1 – 4.
  • Mitsuda N, Takeyasu K, Sato MH. (2001) Pollen-specific regulation of vacuolar H+-Ppase expression by multiple cis-acting elements. Plant Mol. Biol., 46: 185-192.
  • Krishna S, Woodrow C, Webb R, Penny J, Takeyasu K, Kimura M, East JM. (2001) Expression and functional characterization of a Plasmodium falciparum Ca2+-ATPase (PfATP4) belonging to a subclass unique to apicomplexan organisms. J Biol Chem., 276(14):10782-7.
  • Takeyasu K, Okamura H, Ogita Y, Yoshimura SH. (2001) P-type ATPase Diversity and Evolution: The origins of ouabain-sensitivity and subunit assembly. Cell. Mol. Biol., 47: 325-333.
  • Mitsuda N, Enami K, Nakata M, Takeyasu K, Sato MH (2001) Novel type Arabidopsis thaliana H+-Ppase is localized to the Golgi apparatus. FEBS Lett., 488: 29-33.

1995-2000

  • Shiomi Y, Usukura J, Masamura Y, Takeyasu K, Nakayama Y, Obuse C, Yoshikawa H, Tsurimoto T. (2000) ATP-dependent structural change of the eukaryotic clamp loader protein, RFC. Proc. Nat’l Acad. Sci. USA, 97: 14127-14132.
  • Yoshimura SH, Ohniwa RL, Sato MH, Matsunaga F, Kobayashi G, Uga H, Wada C, Takeyasu K. (2000) DNA phase transition promoted by replication initiator. Biochemistry, 39: 9139-9145.
  • Homareda H, Ishii T, Takeyasu K. (2000) Binding domain of oligomycin on Na+/K+-ATPase. Eur. J. Pharmacol., 400: 177-183.
  • Yoda K, Ando S, Morishita S, Hohmura KI, Hashimoto K, Takeyasu K, Okazaki T. (2000) Reconstitution of nucleosomes using recombinant histones and CENP-A proteins. Proc. Nat’l Acad. Sci. USA, 97: 7266-7271.
  • Yasuhara JC, Baumann O, Takeyasu K. (2000) Localization of Na/K-ATPase in developing and adult Drosophila photoreceptors. Cell and Tissue Res., 300: 239-249.
  • Hohmura KI, Itokazu Y, Yoshimura SH, Mizuguchi G, Masamura Y, Takeyasu K, Shiomi Y, Tsurimoto T, Nishijima H, Akita S, Nakayama Y. (2000) AFM with carbon nanotube resolve the subunit organization of protein complexes. J. Electron Microscopy, 49: 415-421.
  • Yoshimura SH, Yoshida C, Igarashi K, Takeyasu K. (2000) AFM proposes a ‘Kiss and Pull’ mechanism for enhancer function. J. Electron Microscopy, 49: 407-413.